To improve performance on one of the tables we added a few indexes based on common searches for that table. The problem was that there were a number of duplicates that prevented creation of the indexes.
To fix this problem I ran the following query all at once in phpmyadmin as temporary tables only last the duration of the connection.
CREATE TEMPORARY TABLE bad_temp AS SELECT DISTINCT * FROM bad_table; DELETE FROM bad_table; INSERT INTO bad_table(email,nid,timestamp) SELECT email,nid,timestamp FROM bad_temp; DROP TABLE bad_temp;This took care of the problem and I was able to add the index.
ALTER TABLE `good_table` ADD PRIMARY KEY (`email`, `nid`, `timestamp`)A nod to Database Journal that gave me the idea.